Job ID no in E.coli= W8FF3TMG01R
Query ID = lcl|Query_45947
The alignment sequence of the human triose phosphate isomerase with the triose phosphate enzyme from Ecoli is given below as follows:
Triosephosphate isomerase 1 [Homo sapiens]
Range 1: 5 to 249GenPeptGraphics Next MatchPrevious Match
Score | Expect | Method | Identities | Positives | Gaps |
---|---|---|---|---|---|
193 bits(491) | 2e-60 | Compositional matrix adjust. | 113/250(45%) | 148/250(59%) | 6/250(2%) |
Query 2 RHPLVMGNWKLNGSRHMVHELVSNLRKELAGVAGCAVAIAPPEMYIDMAKREAEGSHIML 61 R V GNWK+NG + + EL+ L A V APP YID A+++ + I + Sbjct 5 RKFFVGGNWKMNGRKQSLGELIGTLNAAKV-PADTEVVCAPPTAYIDFARQKLD-PKIAV 62 Query 62 GAQNVDLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGL 121 AQN +GAFTGE S M+KD GA ++++GHSERR ESDELI +K A +GL Sbjct 63 AAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAEGL 122 Query 122 TPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPA 181 + CIGE E EAG TE+V Q + A + V+AYEPVWAIGTGK+ATP Sbjct 123 GVIACIGEKLDEREAGITEKVVFEQTKVI--ADNAKDWSKVVLAYEPVWAIGTGKTATPQ 180 Query 182 QAQAVHKFIRDHI-AKVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKAD 240 QAQ VH+ +R + + V +A+ I YGGSV + EL +QPD+DG LVGGASLK + Sbjct 181 QAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPE 240 Query 241 AFAVIVKAAE 250 F I+ A + Sbjct 241 -FVDIINAKQ 249
The other sequence alignment is given below as follows
triosephosphate isomerase isoform 1 [Homo sapiens]
Range 1: 5 to 249GenPeptGraphicsNext MatchPrevious Match
Score | Expect | Method | Identities | Positives | Gaps |
---|---|---|---|---|---|
192 bits(487) | 8e-60 | Compositional matrix adjust. | 112/250(45%) | 147/250(58%) | 6/250(2%) |
Query 2 RHPLVMGNWKLNGSRHMVHELVSNLRKELAGVAGCAVAIAPPEMYIDMAKREAEGSHIML 61 R V GNWK+NG + + EL+ L A V APP YID A+++ + I + Sbjct 5 RKFFVGGNWKMNGRKQSLGELIGTLNAAKV-PADTEVVCAPPTAYIDFARQKLD-PKIAV 62 Query 62 GAQNVDLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGL 121 AQN +GAFTGE S M+KD GA ++++GHSERR ESDELI +K A +GL Sbjct 63 AAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAEGL 122 Query 122 TPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPA 181 + CIGE E EAG TE+V Q + + V+AYEPVWAIGTGK+ATP Sbjct 123 GVIACIGEKLDEREAGITEKVVFEQTKVI--ADNVKDWSKVVLAYEPVWAIGTGKTATPQ 180 Query 182 QAQAVHKFIRDHI-AKVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKAD 240 QAQ VH+ +R + + V +A+ I YGGSV + EL +QPD+DG LVGGASLK + Sbjct 181 QAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPE 240 Query 241 AFAVIVKAAE 250 F I+ A + Sbjct 241 -FVDIINAKQ 249
The chain A alignment of the enzyme triose phosphate isomerase is given below as follows:
Chain A, Triosephosphate Isomerase [Homo sapiens]
Range 1: 2 to 246GenPeptGraphicsNext MatchPrevious Match
Score | Expect | Method | Identities | Positives | Gaps |
---|---|---|---|---|---|
192 bits(488) | 6e-60 | Compositional matrix adjust. | 112/250(45%) | 147/250(58%) | 6/250(2%) |
Query 2 RHPLVMGNWKLNGSRHMVHELVSNLRKELAGVAGCAVAIAPPEMYIDMAKREAEGSHIML 61 R V GNWK+NG + + EL+ L A V APP YID A+++ + I + Sbjct 2 RKFFVGGNWKMNGRKQSLGELIGTLNAAKV-PADTEVVCAPPTAYIDFARQKLD-PKIAV 59 Query 62 GAQNVDLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGL 121 AQN +GAFTGE S M+KD GA ++++GHSERR ESDELI +K A +GL Sbjct 60 AAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAEGL 119 Query 122 TPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPA 181 + CIGE E EAG TE+V Q + + V+AYEPVWAIGTGK+ATP Sbjct 120 GVIACIGEKLDEREAGITEKVVFEQTKVI--ADNVKDWSKVVLAYEPVWAIGTGKTATPQ 177 Query 182 QAQAVHKFIRDHI-AKVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKAD 240 QAQ VH+ +R + + V +A+ I YGGSV + EL +QPD+DG LVGGASLK + Sbjct 178 QAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPE 237 Query 241 AFAVIVKAAE 250 F I+ A + Sbjct 238 -FVDIINAKQ 246
The phylogenetic tree of the different triose phosphate isomerase enzyme sequences obtained from the phylogenetic tree is given below in comparison to Ecoli as obtained from the NCBI website.
The identity is 113/250 nucleotides in the sequences of the enzyme triose phosphate isomerase.
Using the National Center for Biotechnology Information Web site () find the sequence of the enzyme...
5. Professor Clueless has just identified a novel sequence X that s VERY similar to sequence Y as shown by the alignment in Figure 16.2. On the other hand, when he uses blast to find homologs of X against genbank (Figure 16.3), he obtains VERY different results from a blastn with query sequence Y (Figure 16.4). With such similarity between X and Y, he was expecting the two queries to get very similar results. What advice will you give the...
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