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1. Polypeptides are the natural polymer of the naturally occurring amino acids. Their structure can be considered at various(b) Using the following diagram of an a-helix indicate the hydrogen bonds along the main chain For the a-helix what is the nu

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Q1, a) Please find the answer as below image,

N-term. o R i e-term Resonance stoveture y = Dihedral angle (torsion) between Ga Ga Plane e peptide bond o - Dihedral angle (Q2, C, Base on the analysis of given helix structure

i) The nuber of amino acid resudue per turn in the alpha helix is 3.6

ii) The per residue rise is 1.5 Å which results the rise per turn is 5.4 Å.

iii) The psi and phi values for the alpha helix is t30 degree and 140 degree respectively.

d) i)

The below image explain the antiparallel beta strand with the hydrogen bonding is highlighed in red colur.

I- I-Ź 2-I-O= -O-I- Antiparallel 6 - sheet -1-2 1 10 14 -O-I- 10 14 1 10 ! Antiparallel - sheet = ни 12 1 HRH THRH 12 12 Para

ii)  There are two residues per repeat unit which gives the beta-strand a 7 Angstrom..

The anti parallel beta strand length is 7 Angstrom..

iii) The psi and phi values for the antiparallel beta pleated sheet are

psi =  = -139 degree

phi = +135 degree

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