Problem

Local sequence alignment. Often two DNA sequences are significantly different, but contain...

Local sequence alignment. Often two DNA sequences are significantly different, but contain regions that are very similar and are highly conserved. Design an algorithm that takes an input two strings x[1... n] and y[1... m] and a scoring matrix & (as defined in Exercise 6.26), and outputs substrings x and y , of x and y, respectively, that have the highest-scoring alignment over all pairs of such substrings. Your algorithm should take time O(mn).

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Solutions For Problems in Chapter 6