Identifying DNA structural and functional elements from nucleotide sequence information
Listed below are five DNA sequences. Which one contains a type-II restriction endonuclease (“sixcutter”) hexanucleotide site? Which one is likely to form a cruciform structure? Which one is likely to be found in Z-DNA? Which one represents the 5’-end of a tRNA gene? Which one is most likely to be found in a triplex DNA structure?
a. CGCGCGCCGCGCACGCGCTCGCGCGCCGC
b. GAACGTCGTATTCCCGTACGACGTTC
c. CAGGTCTCTCTCTCTCTCTCTC
d. TGGTGCGAATTCTGTGGAT
e. ATCGGAATTCATCG
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