Bioinformatics
Genome Assembly with Perfect Coverage and Repeats
Given a list of error-free DNA 3-mers taken from the same strand of a circular chromosome. Find all circular strings assembled by complete cycles in the de Bruijn graph B2.
Dataset:
ATC ATG CAT CCA GAT GGA TCC TGG
ANSWER ;-
according to the given question ;- ATC ATG CAT CCA GAT GGA TCC TGG
THEN ACCORDING TO THE ABOVE GIVEN ;- TAC TAC GTA GGT CTA CCT AGG ACC
Bioinformatics Genome Assembly with Perfect Coverage and Repeats Given a list of error-free DNA 3-mers taken...
Bioinformatics Assemble the error-free reads from a circular genome on the following dataset. You do not need to consider the reverse complement of the reads. As the reads do not have the same length, convert the reads to 4-mers using the method proposed by Idury and Waterman. Build the de Bruijn graph B3 for the set of 4-mers. Find the genome using the graph. Dataset: CGTTCT CTAG GACGT TAGAC TCTA