Compare and contrast parsimony, maximum likelihood, UPGMA, and neighbor-joining methods as it relates to phylogenetics
Compare and contrast parsimony, maximum likelihood, UPGMA, and neighbor-joining methods as it relates to phylogenetics
Explain what parsimony is and why it is preferred in comstructing phylogenetic trees. Under optimal conditions, all the methods discussed [parsimony, maximum likelihood, neighbor joining akr bayesian inference reveal the true branching pattern of the phylogeny in question with accuracies appraoching 100%. However, real phylogenies are rarely inferred under ideal circumstances. Explain, using examples, why this is so.
In constructing trees (select all that apply): All alternative approaches are the same and can be used in every circumstance. The Neighbor Joining method starts with the points with the greatest distance between them to create a rooted tree. One can use Maximum Likelihood methods which create the tree using a model of the substitution process that finds the tree with the greatest likelihood of producing the observed data set. The Unweighted Pair Group Method using Arithmetic Mean (UPGMA) progressively...
Compare and contrast non-homologous end joining and homologous recombination. What are the pros and cons of each?
Name two different methods for evaluating evidence. Compare and contrast these two methods.
Name two different methods for evaluating evidence. Compare and contrast these two methods.
Name two different methods for evaluating evidence. Compare and contrast these two methods.
1)Based on the Flynn et al paper, how do topologies generated by parsimony methods compare with those from model based analyses? 2)Explain neutral theory, briefly. Why does the molecular clock depend on neutral theory? 3)What is a gene tree and how is it different from a species tree? 4)In your own words, what is long branch attraction?
compare and contrast the strengths and weaknesses of mixed methods reseaech for medical errors.
Compare and contrast the methods that can be used in accounting for investments. How does a company choose a method? What are the advantages and disadvantages of each?
1. Compare and contrast the different methods used to characterise a protein in terms of mass and structure (20)