1. pH of stacking gel = 6.8
pH of resolving gel = 8.8
pH of the buffer used to run the gel = 8.3
pI of glycine = 6.06
pK1 of glycine = 2.34
pK2 of glycine = 9.60
So,
i. Glycine exhibits +1 positive charge at pH below pK1.
ii. Glycine exhibits neutral charge at pH = pI.
i. Glycine exhibits -1 negative charge at pH above pK2.
2. 5 mL of 5% acrylamide gel
For 1% gel -----> 1 g in 100 mL
For 5% gel -----> 5 g in 100 mL
For 5% gel -----> 0.25 g in 5 mL
3. 100 mL of 10X buffer is given.
1 mL of 100 X buffer + 99 mL of water = 100 mL of 1 X buffer
QUESTION 18 (12.10) Shown here is the amino acid glycine at a pH of H3N-CH2-C-O 14 both 1 and 14
Consider the structure of L-alanine. H CH3 SII.. *H3N L-alanine Which structural components are common to all amino acids? IH CH NH coo
At a pH greater than that of its isoelectric point, the structure of glycine is a) H-CH-COOH b) H-CH-COO- c)H-CH-COOH d) H-CH-COO-e) H-CH-COO- + + - NH2 NH3 NH3 NH2 NH2
just complete 8-10 please
coo CH3 CH2 H CH H H HN-c-c-N-C-C-N-C-C-N-C-Coo H OH OH OH 1. How many amino acid residues are in this structure? 2. How many peptide bonds are in this structure? 3. What is the name of the C terminal residue? 4. What is the one-letter abbreviation of the N-terminal residue? 5. What is the sequence, given in three-letter code, of this peptide? 6. Circle one peptide bond. 7. Circle one alpha-carbon. 8. What is the...
3. (2 points) Provide a mechanism, using curved arrow notation, for the formation of glycine and acetaldehyde from threonine. This process occurs by a PLP-dependent enzyme, you may begin your mechanism with the "PLP-primed" enzyme. Be sure to pay careful attention to stereochemistry throughout your mechanism. You may abbreviate any iminium formation, iminium hydrolysis, and transaldimination steps in your mechanism by the conventions shown in lecture. H OH H Me Oo Me H3N H Il acetaldehyde glycine threonine
0 0 2- но е H+ Q02- NAD NADH H20 OH он u Lam 00c NH3+ + H20 Coo +H3N COO +H3N COO- H coo 3-Phospho- glycerate 2. There are three metabolites produced through this pathway that are important for the cell. Two of them are amino acids (identify the amino acids by name). Discuss the role of the third significant product in metabolism.
6. (10 pts) For the following step in the citric acid cycle, COO H COO CH Succinate dehydrogenase + FAD + FADH CH, OOC H COO Succinate Fumarate a. What class of enzyme catalyzes this reaction? b. How does this step ultimately contribute to the formation of ATP? Be specific, c. Knowing that the next step is a hydration of the alkene, briefly explain why this step needed to occur? That is, why not hydrate the succinate?
9. Consider the following molecules. (10 pts) H₃COO-CH₃ H-C-C-H H a. Hyperconjugative factors dictate the most stable conformation for these molecules. Draw their most stable configurations include orbital interactions. b. What are the dipoles for these two molecules in their most stable conformation, does this seem like a reasonable expectation?
b) Show the dipeptide formed by the following two amino acids: + H₂N-CH-Coo- H₂N-CH-COo + + H₂N CH₂ 1 CH₂ 1 SH Phenylalanine Cysteine eys Phe
C.2 Zwitterion structure of C.3 Glycine ion in base Glycine ion in acid glycine Questions and Problems Write the structure of the zwitterion of alanine. Q.5