Question

The fragment sizes that you determined from your gel may not be exactly correct (i.e. they...

The fragment sizes that you determined from your gel may not be exactly correct (i.e. they may not be the same as the ideal results). Select one or more:
a. Measurement error

b. Positively charged DNA

c. Sequencing error

d. RNA digestion

e. Supercoiled linear fragments

f. Poor gel resolution

g. Reverse transcription

h. Reverse orientation

i. Incomplete digestion



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Answer #1

a. Measurement error,

e. Supercoiled linear fragments.

The DNA length in the band of the agarose gel is measured by comparing it with the bands of the DNA ladder. This is a very less efficient method which can incorporate error in the measured data. Moreover, if the DNA is supercoiled, it will be highly packed and can run in the gel in a much faster rate than the actual linear fragment which will again introduce error in size determination.

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