In general:
H2O <--> H+ and OH-
pH low --> H+ rich
pH high --> OH- rich
therefore:
a)
Amino group
it is negatively charged at this pkA (has 1 lone pair)
pKa = 9
if pH = 13; OH- is rich, then it remains NEGATIVE
if pH = 7; there are H+ and OH- almost equally, the substance will attract H+ ions, expect the lone pair to attach to the H+ proton. There is NEUTRAL charge
if pH = 1; there are lots of H+, the substance will attract H+ ions, expect the lone pair to attach to the H+ proton. There is NEUTRAL charge
b)
Carboxilic Acids
it is normally "neutrally charged"
pKA = 2
if pH = 13; OH- is rich, then it the molecule H+ will dissociate in order to react with OH- ions. The moelcule gets NEGATIVE charge
if pH = 7; there are H+ and OH- almost equally, since pKa is pretty low; Neutral charge in general
if pH = 1; there are lots of H+, will not free its H+ easily, it remains NEUTRAL
c)
Hydroxyl group
pKa > 14
this means, it is not likely to give off its H+ as proton
if pH = 13; OH- is rich, then it the molecule H+ will NOT dissociate (since pH is lower than pKa) expect no chang ein charge. It is NEUTRAL
if pH = 7; there are H+ and OH- almost equally, charge remains as neutral
if pH = 1; there are lots of H+, will not free its H+ easily, charge remains as neutral
d)
Sulfhydryl group
pKA = 8
originally neutral charge:
if pH = 13; OH- is rich, then it the molecule H+ will dissociate in order to react with OH- ions. The moelcule gets NEGATIVE charge
if pH = 7; there are H+ and OH- almost equally, since pKa is similar; there is no dissociation, the group remains NEUTRAL
if pH = 1; there are lots of H+, will not free its H+ easily, its pKA is pretty high, meaning it is not acidic. it remains NEUTRAL
List the charge of the functional groups at: the pH indicated (right) The pKa is indicated...
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Using the pKa values given in the table on the right, determine the charge of the side group of the following amino acids at the pH specified. Consider the side group only (not including the charges at the C–terminal or N– terminal). 2. Using the pka values given in the table on the right, determine the charge of the side group of the following amino acids at the pH specified. Consider the side group only (not including the charges at...
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Identify functional groups of the above molecules using the table given. Identify the functional groups in the following molecules. (Use names from the table below. List each class of functional group only once. If there are fewer than 3 functional groups, lcave an appropriate number of answer boxes empty.) OH а) NH2 phenylalanine Cн-он b) NHCH Structures of Some Common Functional Groups Name Structure Name Structure X Alkene Nitro Alkyne C C Thiol Aldehyde Arene Halide Ketone (XF, CI, Br,...
Answer the following questions. For calculations, show all work. You may attach another sheet of paper (2 pt) 1. List all of the amino acids that have side chains that fit into each of the following categories: a. acidic: b. basic: c. nonpolar aromatic: d. sulfur-containing: e. hydroxyl-containing: f. achiral: (2 pt) 2. Protein Lengths. Calculate the length of a 80 amino acid-long stretch of protein if: a. It consists of pure a-helices: b. It consists of pure β strands:-...