Briefly describe the technique of In-vitro Binding Assays
These are also called the ligand binding assays.
These type of assays involve binding of ligand molecules to antibodies, receptors or macromolecules. A detection method determines the extent of binding of the ligand to the receptors.
There are 4 types of binding assays:
1. Radioactive ligand binding assays- Use radio-ligands which bind to the receptors and produce toxic radioactive wastes. e.g. saturation binding, scatchard plot, non linear curve fitting programs, competitive binding.
2. Non-radioactive ligand binding assays- Same as the radioactive ligand binding assays but do not produce the toxic radioactive waste. e.g. fluorescence polarization (FP), fluorescence rasonance energy transfer (FRET), surface plasmon rasonance (SPR)
3. Liquid phase ligand binding assays- Immunoprecipitation assays e.g. ELISA (Enzyme-linked immunosorbent assay) and western blotting.
4. Solid phase ligand binding assays- e.g. multiwell plate assays, on-column ligand binding assays, on-bead ligand binding assays, filter assays, real-time cell binding assays.
1) Radioactive ligand binding assays
Actin treadmilling is a phenomenon observed both in vitro and in cells. (a) Describe how actin filaments are able to “treadmill;” what drives this phenomenon? (b) What is a cellular actin binding protein that would increase actin treadmilling, and describe how.
PCR is an in vitro technique that can be said to mimic a biological function in any living cell. a) What is this biological function? b) Give two similarities in functions between a PCR reaction and you answer in (a) above
d. BC e. a and b f. None of the above 14) Briefly, describe whether you would expect the change in Trp fluorescence intensity to be greater for a protein-protein binding interaction or for protein folding/unfolding and justify your answer. 2 pts 15 Briefly, describe why CD spectroscopy would be a superior technique for analyzing the structure of the following protein sequence compared to UV Nis spectroscopy. 2 pts SEQUENCE: LAVISREPPIHGGSQCMNNHIPPKLFF
Problem 1. The working distance of myosin II proteins is 5 nm, as measured by several in vitro assays. Does this working distance depend on the contraction speeds of muscles in vivo? If it does, how do the contraction speeds of muscles affect the working distance of individual myosin proteins? If it doesn’t, explain why?
Briefly describe how you would apply Function Point Analysis technique to estimate a WebApp project. Make assumption if needed.
Certain laboratories often need to prepare DNA duplexes for transcription factor binding assays. The DNA is purchased as single-stranded polynucleotides and hybridize them to form our duplexes, but this almost always leaves behind some un-renatured, single-stranded DNA, in the solution. How would you go about removing the single-stranded DNA fromour duplexes?
1. Briefly describe the aseptic technique used in lab to prevent contamination of cultures (tubes and plates). True or False: 1. All extremophile bacteria are sensitive to UV irradiation. 2. Deinococcus radiodurans have multiple genome copies and very efficient UV repair systems. 3. The purpose of endospores is to allow bacterial reproduction. 4. The decolorizer agent in the endospore stain is water.
2. (a) Briefly describe the compiler-based register optimization technique (typically (4 marks) (b) Describe the delayed branch technique and explain why it is more common in (4 marks) tetch, indirect and moon used for RISC machines). (c) Show the pipeline activity for the following code fragment with and without applying the delayed branch technique. Assume that there are three pipeline stages (fetch-decode, address calculation, data movement) for load and store RISC machines than in superscalar processors. instructions and two stages...
1. (a) With the aid of an annotated sketch describe the growth technique known as Molecular Beam Epitaxy (MBE). Briefly describe how this growth technique has been used to grow Strans ki-Krastanov quantum dot nanostructures Metal Organic Chemical Vapor Deposition (MOCVD) is an alternative technique for growing epitaxial material. What is the principal advantage of MOCVD over MBE? (b) Figure 1 below shows a shutter sequence for a Il-V MBE reactor, where 1 denotes an open shutter, and 0 denotes...
Can you briefly explain the XCI technique (X chromosome inactivation) and how this technique reveals evidence of multi/polyclonal origins? What about this technique that might allow for better/more precise detection of multi/polyclonal origins?