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Part A When a protein enters the low pH environment of the stomach, charges on amino acid side chains are changed. These chan
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The Ph change alters the charges on amino acid side chains , which break ionic bonds, leading to change in the structure of the protein, which significantly change  the electrostatic energies affecting the polypeptide chain and it will change the primary structure of the protein not the secondary structure of the protein.(as by the effect of this interactions between the atoms of the backbone is not changed).

Hence it will only change the primary structure of the protein.

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