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An alanine in the core of the protein is mutated to leucine. Referring to the LenardJones...

An alanine in the core of the protein is mutated to leucine. Referring to the LenardJones potential, briefly explain what effect this will have on the chemical potential of the folded state. Does the protein become more or less stable?

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Answer #1

Alanine is a hydrophobic amino acid and proteins structure is consist of interior core and external.

Interior is stable by hydrophobic( nonpolar) amino acids because of hydrophobic interactions. External is stable by various ionic interactions of polar amino acids or charged amino acids which cause interactions with water molecules which is polar.

So if Alanine is mutated and leucine is added, as leucine is more hydrophobic as it's hydrocarbon change is long than only hydrogen molecule is present.

So mutated protein will be more stable and it's potential will be more because if you want to change its conformation energy will be needed more.

Thank you

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