The mechanism of glyceraldehyde 3 phosphate dehydrogenase. In step 1 (Top Left) the sulfur from the cysteine loses its hydrogen to the carbonyl carbon of the substrate. I think is wrong and the hydrogen is stolen by the histidine (nitrogen) using a base catalyst reaction.
Yes, you are right it is abstracted by Histidine but in this note book it is abstracted in second step. The correct mechanism is :
The mechanism of glyceraldehyde 3 phosphate dehydrogenase. In step 1 (Top Left) the sulfur from the cysteine loses its...
35) The overall reaction of glyceraldehyde 3-phosphate dehydrogenase (GAP glyceraldehyde 3-phosphate + NAD+ + P = 1,3-bisphosphoglycerate + NADH GAPDH couples together two reactions with favorable (AG'°-50 kj/mol) and unfavorable (AG' +50 kJ/mol) Gibbs free energies, respectively. a) (6 pts) Write the balanced chemical equations for the two separate reactions. b) (6 pts) Draw the structure of the thiohemiacetal intermediate and show the mechanism for generating the acyl thioester intermediate. 36) (4 pts) Under anaerobic conditions, lactic acid fermentation regenerates...
The conversion of glyceraldehyde 3-phosphate to 1,3-bisphosphoglycerate is catalyzed by the enzyme glyceraldehyde 3-phosphate dehydrogenase. Formation of the enzyme-substrate complex involves nucleophilic attack by an active site cysteine residue on glyceraldehyde 3-phosphate to form a tetrahedral intermediate. However, cysteine-dependent nucleophilic attack only occurs when NAD+ is bound, which depresses the pKR for cysteine from 8 to 5.5. Please propose an alternative active site arrangement that may lead to the formation of a tetrahedral covalent intermediate without the requirement for NAD+...
Glyceraldehyde-3-phosphate dehydrogenase catalyzes the phosphorylation of glyceraldehyde-3-phosphate, but unlike other glycolytic reactions, it does not require energy investment from ATP. This reaction occurs in two stages: oxidation/reduction and phosphorylation. Why is the oxidation/reduction reaction necessary to make phosphorylation favorable? Choose one: A. The oxidation/reduction reaction is necessary to oxidize phosphate, allowing addition to the substrate. B. The oxidation/reduction reaction is necessary to form an intermediate with a large free energy of hydrolysis. C. The oxidation/reduction reaction is necessary to produce...
In the formation of the thioester in the oxidation of Glyceraldehyde-3-phosphate by Glyceraldehyde-3-dehydrogenase which of the following statements is true? A) The thioester intermediate is more stable (lower free energy) than the reactant B) the thioester intermediate is less stable (higher free energy) than the reactant C) the thioester intermediate is more stable (lower free energy) than the product D) In the organic chemistry lab, thioester allows for the formation of acyl-phosphate E) in the organic chemistry lab, thoiester formation...
5. During step six of glycolysis glyceraldehyde-3-phosphate (G3P) is converted to 1,3- bisphosphoglycerate (1,3-BPG) and NAD+ is converted to NADH. (You can ignore the concentration of protons in the upcoming calculation.) G3P + P + NAD+ = 1,3 - BPG + NADH + H+ In the human erythrocyte, the concentration of G3P is 0.019 mm, the concentration of 1,3-BPG is 0.001 mM, the concentration of P, is 1.0 mm, and the ratio of NAD+ to NADH is 1000 to 1....
14. Which step of reaction requires inorganic phosphate? What is the enzyme? Which enzyme category does it belong to? 15. Which step of reaction produces H20 as a byproduct? P-0-CH CH - Glyceraldehyde 3-phosphate Dihydroxyacetone phosphate triose phosphate -O-CH2 -CHCH isomerase 2NAD Ilyceraldehyde oxidation and (b) Payoff phase Oxidative conversion of (2) Glyceraldehyde (21 -0-CH -CH glyceraldehyde 3-phosphate 3-phosphate to pyruvate and the coupled 2P IN 6 formation of ATP and NADH 2NAD I 3 phosphate Jl dehydrogenase phosphorylation 2...
In the conversion of glyceraldehyde-3-phosphate to 1,3-bisphosphoglycerate, NADH is made and phosphate is added. What drives this reaction? O The hydrolysis of ATP to phosphorylate carbon 1 of glyceraldehyde-3-phosphate. The reduction of glyceraldehyde-3-phosphate. The reduction of NAD+. O The oxidation of glyceraldehyde-3-phosphate.
17. The reaction shown below describes the formation of 1,3-disphosphoglycerate from glyceraldehyde-3-phosphate. This reaction is coupled with the formation of NADH from NAD+ Which statement below is correct? CH,-0-P CHOH c=0 3CH2--0- CHOH 'c=0 он a. The reaction of glyceraldehyde-3-phosphate to form 1,3-disphosphoglycerate is an oxidation b. The reaction of glyceraldehyde-3-phosphate to form 1,3-disphosphoglycerate is a reduction c. The reaction of glyceraldehyde-3-phosphate to form 1,3-disphosphoglycerate is a hydrolysis. d. The reaction of glyceraldehyde-3-phosphate to form 1,3-disphosphoglycerate is an isomerization.
4. What is the commited step of glycolysis and how is this enzyme regulated? 5. Glyceraldehyde-3-phophate dehydrogenase (GAPDH) is the most important enzyme in glycolysis. a. What two reactions are coupled by GAPDH? b. Draw the structure of the thiohemiacetal intermediate and show the mechanism for generating the acyl thioester intermediate. A+Bred Ared +B For the reaction: AG = Given: ngAE RT In n[Aj{8,al Nernst Equation: AE=A Use the reduction potentials in Table 14-4 to calculate the electromotive force, AE,...
The reaction glyceraldehyde-3-phosphate + NAD++Pi→ 1,3 diphosphoglycerate + NADH+H+ has ΔrG∘′=6.3kJmol−1. If the standard reduction potential ε∘′ of NAD+ is -0.324 V and the reaction 1,3 diphosphoglycerate + ADP→ 3-phosphoglycerate + ATP has ΔrG∘′=−18.8kJ/mol, calculate the standard reduction potential ε∘′ for the reaction 3-phosphoglycerate +2e−+3H+→ glyceraldehyde-3-phosphate +H2O.