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Question 5. Protein X, a protein that binds tyrosine tightly, can be purified in three chromatography steps: 1) affinity chromatography using a tyrosine resin, 2) gel filtration chromatography using a resin with a separation range of 30-200 kDa, and 3) anion exchange chromatography run at pH 7.6. The elution profiles for Steps #2 and #3 and a diagram of the SDS-PAGE of the sample at each step of purification are shown below Size Exclusion Chromatography Anion Exchange Chromatography flow- through fraction fraction 150 kDa 50 kDa 25 kDa elution volume elution volume (arrows indicate elution volumes of standard samples of known molecular weight) SDS-PAGE Gel final purified protein X size exclusionanion exchange fraction f fraction A through B Mw affinity void unred. reduced MW 250 kD 120 120 60 30 lane#1 2 3 4 5 6 7 8 9 (lanes 1 and 9 contain standard proteins of known molecular weight, indicated next to each band) Confused on how to answer questions E, F, and G.

The answer for E is Cysteine,

F (i) is 2

F (ii) is 2

F (iii) is 180

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Answer #1

E) In lane 8 in SDS-PAGE, the di-sulfide bond (covalent bond) has been broken with the help of SDS , a anaionic detergent. Disulphide bond formed between sulfer containing amino acid which is Cystein. Cystein fromed disulphide bond between them.

F) After reducing the native protein broken into large and small subunits which was held together by the disulphide bonds in lane 8. that's why ..

(i) there is 2 large subunits ( which is 60 Kda and 2 fold thick band in unreduced conditions)

(ii) 2 small ubunits as well from reduced protein we can see that

(iii) Total molecular weight of protein X is 180 ( 60+60 for large subunit and 30+30 for small subunits)

disulfide bond Tertiary Structure Quaternary Structure

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