Question

2. The sequences of 13 promoters recognized by σ70 factor of RNA polymerase have been aligned below. Deduce the consensus sequences for the -10 and -35 regions of these promoters. The TSS is highlighted. Do your consensus sequences agree with the actual consensus sequences? If not, why? Gene 1: TCTCAACGTAACACTTTACAGCGGCG--CGTCATTTGATATGATGC-GCCCCGCTTCCCGATAAGGG Gene 2: GATCAAAAAAATACTTGTGCAAAAAA--TTGGGATCCCTAT

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Answer #1

promoter contains two short sequence elements

-10 (Pribnow Box) and TATAAT Sequence

-35 nucleotides TTGACA sequence

Both are located upstream from the transcription start site.

TsS in bacteria contains either or G base at TSS.  .

Here in the above promoter example none of the promoter has all 3 sequence similar to actual consensus sequence which are mentioned above in the answer

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