what is the Manhattan tourist problem. How does this algorithm related to sequence alignment?
what is the Manhattan tourist problem. How does this algorithm related to sequence alignment?
Homework Answers
Manhattan Tourist problem(MTP) is imagine seeking a path from a given source to given destination in a manhattan city like grid manner that maximizes the number of attractions passed from it.In the MTP grid every step you must make progress towards the goal.by the MTP grid we can establish a phylogeny between organisms and to identify functional or conserved components of the sequences.
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what is the Manhattan tourist problem. How does this
algorithm related to sequence alignment?
Biochemistry What is the protein domain in the context of a sequence alignment algorithm? How do you identify domain sin...
Biochemistry What is the protein domain in the context of a sequence alignment algorithm? How do you identify domain sin PFam?
The following are descriptions regarding the progressive approach for multiple sequence alignment used in Clustal algorithm....
The following are descriptions regarding the progressive approach for multiple sequence alignment used in Clustal algorithm. Put the statements in the correct order, such that they are in the right order in the Clustal algorithm. A- The already aligned sequences are converted into a consensus sequence. A pair wise alignment is conduct for very possible pair of sequences using the Needleman Wunsch algorithm A distance matrix is generated. A guide tree is created using the information in the distance matrix....
Does your sequence match what is on the FASTA screen? How similar are the data? What...
Does your sequence match what is on the FASTA screen?
How similar are the data?
What does this mean with respect to alignment and similarity?
Explain fully
Sequence:
FVVKAVSDPG RQDIKGSAPL AVGLAIAAGH LCAIKLSGAS MNPARSFGPA
FASTA:
Question 8 (1 point) An algorithm is a finite sequence of steps to solve a problem....
Question 8 (1 point) An algorithm is a finite sequence of steps to solve a problem. It is an intermediate step before coding. Does the following algorithm have a lost update problem? Let x, y be common variables; let a, b be local variables. Producer: for (int i = 0; i < 10; i++) { lock (x) { a = x a ++; X-a; } } Consumer: for (int i 0; i <10; i++) lock (x) { ax a a;...
Question 9 (1 point) An algorithm is a finite sequence of steps to solve a problem....
Question 9 (1 point) An algorithm is a finite sequence of steps to solve a problem. It is an intermediate step before coding. Does the following algorithm have a lost update problem? Let x, y be common variables; let a, b be local variables. p1: for (int i = 0; i <10; i++) = < { a = x a ++; X = a; } p2: for (int i 0; i < 10; i++) { ax a ++; a ++;...
1. How do UPGMA and NJ similar? 2. How does the BLAST algorithm work? What is...
1. How do UPGMA and NJ similar? 2. How does the BLAST algorithm work? What is a ‘word’? How are words derived from the input (query) sequence? Once words are identified from the input, what is searched? How does BLAST extend a match? 3. How do BLOSUM and PAM compare? What’s similar between the two? What’s different? How do sequence search algorithms (e.g., BLAST) and transition matrices (e.g., BLOSUM and PAM) relate?
How does the book The Accidental Tourist by Anne Tyler dramatize the issue of dysfunctional families?
How does the book The Accidental Tourist by Anne Tyler dramatize the issue of dysfunctional families?
Genetics Lab Part A: If an alignment has a very low E value, does this mean...
Genetics Lab Part A: If an alignment has a very low E value, does this mean that the two sequences are homologous? IF the answer is "No", then what does a very low E value mean? Define Homologous as it is used when talking about DNA sequences. How low an E value do you need to infer that the two sequences that are aligned are similar biologically? What does an E Value of 0.0 mean as far as 1e-?? is...
ALGORITHM PROBLEM: A) Significant Inversions: We are given a sequence of n arbitrary but distinct real...
ALGORITHM PROBLEM: A) Significant Inversions: We are given a sequence of n arbitrary but distinct real numbers <a1 , a2 ,..., an>. We define a significant inversion to be a pair i < j such that ai > 2 aj . Design and analyze an O(n log n) time algorithm to count the number of significant inversions in the given sequence. [Hint: Use divide-&-conquer. Do the “combine” step carefully] B) The Maximum-Sum Monotone Sub-Array Problem: Input: An array A[1..n] of...
a) what is metabolism and how does it affect the body's help? what are common alterations related...
a) what is metabolism and how does it affect the body's help? what are common alterations related to metabolism? b) What is happening in the cells, tissues, and body? what is the basic problem? Relate this concept to a disease.
The following are descriptions regarding the progressive approach for multiple sequence alignment used in Clustal algorithm. Put the statements in the correct order, such that they are in the right order in the Clustal algorithm. A- The already aligned sequences are converted into a consensus sequence. A pair wise alignment is conduct for very possible pair of sequences using the Needleman Wunsch algorithm A distance matrix is generated. A guide tree is created using the information in the distance matrix....
Does your sequence match what is on the FASTA screen?
How similar are the data?
What does this mean with respect to alignment and similarity?
Explain fully
Sequence:
FVVKAVSDPG RQDIKGSAPL AVGLAIAAGH LCAIKLSGAS MNPARSFGPA
FASTA:
Question 8 (1 point) An algorithm is a finite sequence of steps to solve a problem. It is an intermediate step before coding. Does the following algorithm have a lost update problem? Let x, y be common variables; let a, b be local variables. Producer: for (int i = 0; i < 10; i++) { lock (x) { a = x a ++; X-a; } } Consumer: for (int i 0; i <10; i++) lock (x) { ax a a;...
Question 9 (1 point) An algorithm is a finite sequence of steps to solve a problem. It is an intermediate step before coding. Does the following algorithm have a lost update problem? Let x, y be common variables; let a, b be local variables. p1: for (int i = 0; i <10; i++) = < { a = x a ++; X = a; } p2: for (int i 0; i < 10; i++) { ax a ++; a ++;...
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