Sequence:
FVVKAVSDPG RQDIKGSAPL AVGLAIAAGH LCAIKLSGAS MNPARSFGPA
FASTA:
The given sequence matches the FASTA sequence 100% and the alignment is also 100%.
As the amino acids are matching completely with the template strand, they can be said to be similar.
As this sequence is a manageable one, the sequence's global alignment seems to be similar.
This sequences can be a conserved region of a protein which has a same sequence.
Does your sequence match what is on the FASTA screen? How similar are the data? What...
Genetics Lab Part A: If an alignment has a very low E value, does this mean that the two sequences are homologous? IF the answer is "No", then what does a very low E value mean? Define Homologous as it is used when talking about DNA sequences. How low an E value do you need to infer that the two sequences that are aligned are similar biologically? What does an E Value of 0.0 mean as far as 1e-?? is...
1. How do UPGMA and NJ similar? 2. How does the BLAST algorithm work? What is a ‘word’? How are words derived from the input (query) sequence? Once words are identified from the input, what is searched? How does BLAST extend a match? 3. How do BLOSUM and PAM compare? What’s similar between the two? What’s different? How do sequence search algorithms (e.g., BLAST) and transition matrices (e.g., BLOSUM and PAM) relate?
what is the Manhattan tourist problem. How does this algorithm related to sequence alignment?
Genetics - Question 4 [15 marks] Sequence alignment is a critical tool for the analysis of genome data. Explain the purpose of alignment scores in identifying the best alignments. [5 marks] What is the general concept upon which all protein scoring matrices are based? [3 marks] What is the difference between PAM and BLOSUM scoring matrices? [2 marks] You have a DNA sequence from a new microorganism. You search the NCBI nonredundant nucleic acid database using BLASTN. Surprisingly, you do...
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Here is a DNA sequence obtained from sequencing. Does this sequence code for a gene? How can you tell? Is this a eukaryotic or prokaryotic gene? How can you tell? If it does code for a gene, what is the protein sequence encoded by this DNA sequence? Explain how you can tell. Are there any regulatory regions encoded by this DNA sequence? How can you tell?TTATGTATGTAGATGGGGCAGCTAACAGGGAGACTAAATTAGGAAAAGCAGGTTATGTTACTGACAGAGGAAGACAAAAGGTTGTTTCCATAACTGACACAACAAATCAGAAGACAGAGTTACAAGCAATTCATCTAGCTTTGCAGGATTCGGGATCAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGGATCATTCAAGCACAACCAGATAAAAGTGAATCAGAGTTAGTTAGCCAAATAATAGAGCAGTTAATAAATAAGGAAAAGATCTACCTGGCATGGGTACCAGCACATAAAGGAATTGGAGGAAATGAACAAGTAGATAAATTAGTTAGTGCTGGAGTCAGGAAAGTATAGTTT
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